Test for aprun launcher.

joblaunch/.check4newver

+2016-04-28: new version installed
+2016-04-28: next check of /u/subawardee/rbudiard/SWTools-BWCI/trunk/joblaunch on 2016-07-27

joblaunch/.exceptions

+noweb
+#protected 0022 
+#vendor

joblaunch/1.0/cle5.2/.owners

+rbudiard
\ No newline at end of file

joblaunch/1.0/cle5.2/rebuild

+#!/bin/ksh
+
+############################## standard interface to /sw tools
+# Input:
+#   Environment variables
+#     SW_BLDDIR    current directory (PWD) minus /autofs/na1_ stuff
+#     SW_ENVFILE   file to be sourced which has alternate prog environment
+#                     only to be used in special circumstances
+#     SW_WORKDIR   unique work dir that local script can use
+# Output
+#   Return code of 0=success or 1=failure 
+##############################
+
+# exit 3 is a signal to the sw infrastructure that this template has not 
+# been updated; please delete it when ready
+
+if [ -z $SW_BLDDIR ]; then
+  echo "Error: SW_BLDDIR not set!"
+  exit 1
+else
+  cd $SW_BLDDIR
+fi
+
+if [ -z $SW_ENVFILE ]; then
+  ### Set Environment (do not remove this line only change what is in between)
+  . ${MODULESHOME}/init/ksh
+  . ${SW_BLDDIR}/remodule
+  ### End Environment (do not remove this line only change what is in between)
+else
+  . $SW_ENVFILE
+fi
+
+############################## app specific section
+#  
+
+# clear out old installation to prevent potential libtool chmod 
+# commands from failing when reinstalled by another person
+rm -rf bin lib include doc share man etc libexec info
+
+#clear out status file since re-making
+rm -f status
+
+echo "Nothing to build for this application."
+
+
+############################### if this far, return 0
+exit 0

joblaunch/1.0/cle5.2/relink

+#!/bin/ksh
+
+############################## standard interface to /sw tools
+# Input:
+#   Environment variables
+#     SW_BLDDIR    current directory (PWD) minus /autofs/na1_ stuff
+#     SW_ENVFILE   file to be sourced which has alternate prog environment
+#                     only to be used in special circumstances
+#     SW_WORKDIR   unique work dir that local script can use
+# Output
+#   Return code of 0=success or 1=failure 
+##############################
+
+# exit 3 is a signal to the sw infrastructure that this template has not 
+# been updated; please delete it when ready
+exit 3
+
+if [ -z $SW_BLDDIR ]; then
+  echo "Error: SW_BLDDIR not set!"
+  exit 1
+else
+  cd $SW_BLDDIR
+fi
+
+if [ -z $SW_ENVFILE ]; then
+  ### Set Environment (do not remove this line only change what is in between)
+  . ${MODULESHOME}/init/ksh
+  . ${SW_BLDDIR}/remodule
+  ### End Environment (do not remove this line only change what is in between)
+else
+  . $SW_ENVFILE
+fi
+
+############################## app specific section
+#  
+
+# clear out old installation to prevent potential libtool chmod 
+# commands from failing when reinstalled by another person
+rm -rf bin lib include doc share man etc libexec info
+
+#clear out status file since re-making
+rm -f status 
+
+cd $SRCDIR
+
+#probably overkill, need surgical strike on binary executables
+make clean
+
+make all
+  if [ $? -ne 0 ] ; then
+    echo "$PACKAGE make failed"
+    exit 1
+  fi
+
+make install
+if [ $? -ne 0 ] ; then
+  echo "$PACKAGE install failed"
+  exit 1
+fi
+
+cd ../
+
+############################### if this far, return 0
+exit 0

joblaunch/1.0/cle5.2/remodule

+  ### Set Environment (do not remove this line only change what is in between)
+  . ${MODULESHOME}/init/ksh
+  module unload PrgEnv-pgi
+  module unload PrgEnv-cray
+  module unload PrgEnv-gnu
+  module unload PrgEnv-intel
+  module unload darshan
+  ### End Environment (do not remove this line only change what is in between)
+  module load PrgEnv-cray
+# load any other dependent modules here
+
+# env vars here
+
+PACKAGE=joblaunch
+VER=1.0
+SRCDIR=$PACKAGE-$VER
+
+# these may need to go up in the special section between ###
+#export CC=cc
+#export CXX="CC -DMPICH_IGNORE_CXX_SEEK"
+#export CC=gcc
+#export CXX=g++
+export CC=cc
+export CXX=CC
+export MPICC=cc
+export MPICXX=CC
+export FC=ftn
+export MPIFC=ftn
+#export LIBS=" -ldl"
+#export CPPFLAGS=-DpgiFortran
+

joblaunch/1.0/cle5.2/retest

+#!/bin/ksh
+
+############################## standard interface to /sw tools
+# Input:
+#   Environment variables
+#     SW_BLDDIR    current directory (PWD) minus /autofs/na1_ stuff
+#     SW_ENVFILE   file to be sourced which has alternate prog environment
+#                     only to be used in special circumstances
+#     SW_WORKDIR   work dir that local script can use
+# Output:
+#   Return code of 0=success or 1=failure   or 2=job submitted
+#
+# Notes:
+#   If this script is called from swtest, then swtest requires 
+#   SW_WORKDIR to be set.  Then swtest adds a unique path to what 
+#   user gave swtest (action+timestamp+build) and provides this
+#   script with a uniquely valued SW_WORKDIR.  swtest will
+#   automatically remove this unique workspace when retest is done.
+##################################################################
+
+# exit 3 is a signal to the sw infrastructure that this template has not 
+# been updated; please delete it when ready
+
+if [ -z $SW_BLDDIR ]; then
+  echo "Error: SW_BLDDIR not set!"
+  exit 1
+else
+  cd $SW_BLDDIR
+fi
+
+if [ -z $SW_ENVFILE ]; then
+  ### Set Environment (do not remove this line only change what is in between)
+  . ${MODULESHOME}/init/ksh
+  . ${SW_BLDDIR}/remodule
+  ### End Environment (do not remove this line only change what is in between)
+else
+  . $SW_ENVFILE
+fi
+
+############################## app specific section
+#  
+set -o verbose
+#clear out status file since re-testing
+rm -f status 
+
+cd $SW_WORKDIR
+
+#-- Four things are required in the PBS script such that it can be followed
+#   correctly by jenkins:
+#   1. The PBS_JOBID (given upon submission with 'qsub') needs to be written
+#      to the ${SW_BLDDIR}/.running file on submission
+#   2. The main output of the test (i.e. typically "aprun" command output)
+#      needs to be appended to ${SW_BLDDIR}/.running as the test runs
+#   3. If the test succeed, the first line of $SW_BLDDIR/status file must be 
+#      the string "verified"
+#   4. ${SW_BLDDIR}/.running must be removed after the test completes
+    
+
+cat > ${PACKAGE}.pbs << EOF
+#!/bin/bash
+#PBS -N ${PACKAGE}
+#PBS -j oe
+#PBS -l nodes=1:ppn=32,walltime=30:00
+
+set -o verbose
+cd \$PBS_O_WORKDIR
+
+TIME="/usr/bin/time -f 'elapsed %e'"
+UPTIME=/usr/bin/uptime
+
+#-- Wrapped aprun and Real aprun:
+W_APRUN=`which aprun`
+R_APRUN=/usr/bin/aprun
+
+#-- Test with XALT's aprun wrapper
+eval \$TIME \$W_APRUN -n 1 \$UPTIME 2>&1 | tee w_aprun.log | tee -a ${SW_BLDDIR}/.running
+
+#-- Test with real aprun
+eval \$TIME \$R_APRUN -n 1 \$UPTIME 2>&1 | tee r_aprun.log | tee -a ${SW_BLDDIR}/.running
+
+echo "verified" > ${SW_BLDDIR}/status
+
+grep elapsed w_aprun.log | grep -v time | awk '{print "YVALUE=",\$2}' \
+  | sed 's/ //g' > ${SW_BLDDIR}/w_aprun
+grep elapsed r_aprun.log | grep -v time | awk '{print "YVALUE=",\$2}' \
+  | sed 's/ //g' > ${SW_BLDDIR}/r_aprun
+
+JOBID=\`echo \$PBS_JOBID | cut -d "." -f1 \`
+chmod 775 ${SW_BLDDIR}/status
+rm ${SW_BLDDIR}/.running
+cat \${JOBID}.OU >> ${SW_BLDDIR}/test.log
+cat ${PACKAGE}.log >> ${SW_BLDDIR}/test.log
+chmod 664 ${SW_BLDDIR}/test.log
+EOF
+
+
+#submit job and touch .running file - marker to infrastructure that
+qsub ${PACKAGE}.pbs > ${SW_BLDDIR}/.running
+
+# qsub returns 0 on successful job launch, so if failure return 1
+if [ $? -ne 0 ]; then
+  echo "Error submitting job"
+  rm -f .running
+  exit 1
+else
+  echo "Job submitted"
+  cat ${SW_BLDDIR}/.running
+  exit 2
+fi
+
+cd ../
+
+cd ../../
+
+############################### if this far, return 0
+exit 0

joblaunch/1.0/cle5.2/status

+verified

joblaunch/description

+<h1>Title</h1>
+
+<p> Category: 
+
+<h2>Description</h2>
+
+<p> Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text
+Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text
+Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text
+Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text
+
+<h2>Use</h2>
+
+<p> Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text
+ Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text
+ Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text Text
+
+<pre>
+code
+code
+code
+code
+code
+</pre>
+

joblaunch/support

+ncsa or vendor or ncsa+vendor

joblaunch/versions

+development:
+current:
+deprecated: