add example pars

IOZeroD/par/gaussian0719.par → IOZeroD/par/gaussian.par

@@ -29,6 +29,6 @@ cactus::cctk_itlast = 100
 # Method of Lines (MoL)
 methodoflines::ode_method = "icn"
 
-iozerod::cctk_iozerod_outdir = "/mnt/f/linux/spin2018/simulation_output/"
-iozerod::h5_output_var_name = "wavemol::energy{every_it=2} wavemol::phi{dataset='out'} wavemol::energy{dataset='out'} wavemol::phit{dataset='out'}"
+iozerod::cctk_iozerod_outdir = "~/simulation-output"
+iozerod::h5_output_var_name = "MoL::MoL_Counters{out_it=1} MoL::RKAlphaCoefficients{dataset='out' out_dt=0.1}"
 iozerod::mem_cache_size_per_var = 8

IOZeroD/par/gaussian_hdf5.par

-############################################################
-#
-# gaussian.par
-#
-# A simple example parameter file for WaveMoL
-#
-############################################################
-
-ActiveThorns = "CoordBase localreduce SymBase NaNChecker PUGHReduce CartGrid3D PUGH Boundary IDWaveMoL PUGHSlab WaveMoL Time MoL IOZeroD IOBasic"
-
-
-idwavemol::initial_data = "gaussian"
-
-wavemol::bound = "radiation"
-
-grid::domain = "full"
-grid::type = "byspacing"
-grid::avoid_origin = "no"
-driver::global_nx = 51
-driver::global_ny = 51
-driver::global_nz = 51
-grid::dxyz = 0.02
-driver::ghost_size = 1
-time::dtfac = 0.5
-
-cactus::cctk_itlast = 100
-
-
-# Method of Lines (MoL)
-methodoflines::ode_method = "icn"
-
-iozerod::cctk_iozerod_outdir = "/mnt/f/linux/spin2018/simulation_output/"
-
-# optionlist usage:
-# groupname::varname{datasetname}
-# if no dataset name or no option list is provided, variable goes into its own dataset
-# variables with same datasetname will be grouped in a single dataset
-iozerod::h5_output_var_name = "wavemol::energy{out} wavemol::phi{out} wavemol::energy wavemol::phi"
-

IOZeroD/par/qc0-mclachlan.par

+Cactus::cctk_run_title = "QC-0"
+
+Cactus::cctk_full_warnings         = yes
+Cactus::highlight_warning_messages = no
+
+Cactus::terminate       = "time"
+Cactus::cctk_final_time = 200.0
+
+
+
+ActiveThorns = "IOUtil"
+
+IO::out_dir = $parfile
+
+
+
+ActiveThorns = "AEILocalInterp"
+
+#ActiveThorns = "BLAS LAPACK"
+
+ActiveThorns = "Fortran"
+
+ActiveThorns = "GSL"
+
+ActiveThorns = "GenericFD"
+
+ActiveThorns = "HDF5"
+
+ActiveThorns = "LocalInterp"
+
+ActiveThorns = "LoopControl"
+
+ActiveThorns = "Slab"
+
+ActiveThorns = "TGRtensor"
+
+
+
+ActiveThorns = "SummationByParts"
+
+SummationByParts::order = 4
+
+
+
+ActiveThorns = "InitBase"
+
+
+
+ActiveThorns = "Carpet CarpetLib CarpetInterp CarpetReduce CarpetSlab"
+
+Carpet::verbose           = no
+Carpet::veryverbose       = no
+Carpet::schedule_barriers = no
+Carpet::storage_verbose   = no
+#Carpet::timers_verbose    = no
+CarpetLib::output_bboxes  = no
+
+Carpet::domain_from_coordbase = yes
+Carpet::max_refinement_levels = 10
+
+driver::ghost_size       = 3
+Carpet::use_buffer_zones = yes
+
+Carpet::prolongation_order_space = 5
+Carpet::prolongation_order_time  = 2
+
+Carpet::convergence_level = 0
+
+Carpet::init_fill_timelevels = yes
+#Carpet::init_3_timelevels = yes
+
+Carpet::poison_new_timelevels = yes
+CarpetLib::poison_new_memory  = yes
+
+Carpet::output_timers_every      = 5120
+CarpetLib::print_timestats_every = 5120
+CarpetLib::print_memstats_every  = 5120
+
+
+
+ActiveThorns = "NaNChecker"
+
+NaNChecker::check_every     = 1 # 512
+#NaNChecker::verbose         = "all"
+#NaNChecker::action_if_found = "just warn"
+NaNChecker::action_if_found = "terminate"
+NaNChecker::check_vars      = "
+        ML_BSSN::ML_log_confac
+        ML_BSSN::ML_metric
+        ML_BSSN::ML_trace_curv
+        ML_BSSN::ML_curv
+        ML_BSSN::ML_Gamma
+        ML_BSSN::ML_lapse
+        ML_BSSN::ML_shift
+        ML_BSSN::ML_dtlapse
+        ML_BSSN::ML_dtshift
+        ADMBase::metric
+        ADMBase::curv
+        ADMBase::lapse
+        ADMBase::shift
+        ADMBase::dtlapse
+        ADMBase::dtshift
+"
+
+
+
+ActiveThorns = "Boundary CartGrid3D CoordBase ReflectionSymmetry RotatingSymmetry180 SymBase"
+
+CoordBase::domainsize = "minmax"
+
+CoordBase::xmin =    0.00
+CoordBase::ymin = -120.00
+CoordBase::zmin =    0.00
+CoordBase::xmax = +120.00
+CoordBase::ymax = +120.00
+CoordBase::zmax = +120.00
+CoordBase::dx   =    2.00
+CoordBase::dy   =    2.00
+CoordBase::dz   =    2.00
+
+CoordBase::boundary_size_x_lower     = 3
+CoordBase::boundary_size_y_lower     = 3
+CoordBase::boundary_size_z_lower     = 3
+CoordBase::boundary_size_x_upper     = 3
+CoordBase::boundary_size_y_upper     = 3
+CoordBase::boundary_size_z_upper     = 3
+
+CoordBase::boundary_shiftout_x_lower = 1
+CoordBase::boundary_shiftout_z_lower = 1
+
+CartGrid3D::type = "coordbase"
+
+ReflectionSymmetry::reflection_z   = yes
+ReflectionSymmetry::avoid_origin_z = no
+
+
+
+ActiveThorns = "SphericalSurface"
+
+SphericalSurface::nsurfaces = 6
+SphericalSurface::maxntheta = 39
+SphericalSurface::maxnphi   = 76
+
+SphericalSurface::ntheta      [0] = 39
+SphericalSurface::nphi        [0] = 76
+SphericalSurface::nghoststheta[0] = 2
+SphericalSurface::nghostsphi  [0] = 2
+
+SphericalSurface::ntheta      [1] = 39
+SphericalSurface::nphi        [1] = 76
+SphericalSurface::nghoststheta[1] = 2
+SphericalSurface::nghostsphi  [1] = 2
+
+SphericalSurface::ntheta      [2] = 39
+SphericalSurface::nphi        [2] = 76
+SphericalSurface::nghoststheta[2] = 2
+SphericalSurface::nghostsphi  [2] = 2
+
+SphericalSurface::ntheta      [3] = 39
+SphericalSurface::nphi        [3] = 76
+SphericalSurface::nghoststheta[3] = 2
+SphericalSurface::nghostsphi  [3] = 2
+
+SphericalSurface::ntheta      [4] = 39
+SphericalSurface::nphi        [4] = 76
+SphericalSurface::nghoststheta[4] = 2
+SphericalSurface::nghostsphi  [4] = 2
+
+SphericalSurface::ntheta      [5] = 39
+SphericalSurface::nphi        [5] = 76
+SphericalSurface::nghoststheta[5] = 2
+SphericalSurface::nghostsphi  [5] = 2
+
+
+
+ActiveThorns = "CarpetMask"
+
+CarpetMask::verbose = no
+
+CarpetMask::excluded_surface       [0] = 0
+CarpetMask::excluded_surface_factor[0] = 1.0
+
+CarpetMask::excluded_surface       [1] = 1
+CarpetMask::excluded_surface_factor[1] = 1.0
+
+CarpetMask::excluded_surface       [2] = 2
+CarpetMask::excluded_surface_factor[2] = 1.0
+
+
+
+ActiveThorns = "CarpetRegrid2 CarpetTracker"
+
+CarpetTracker::surface[0] = 0
+CarpetTracker::surface[1] = 1
+CarpetTracker::surface[2] = 2
+
+CarpetRegrid2::regrid_every            = 128
+CarpetRegrid2::freeze_unaligned_levels = yes
+CarpetRegrid2::symmetry_rotating180    = yes
+CarpetRegrid2::verbose                 = yes
+
+CarpetRegrid2::num_centres = 3
+
+CarpetRegrid2::num_levels_1         =  7
+CarpetRegrid2::position_x_1         = +1.168642873
+CarpetRegrid2::radius_1[ 1]         =  64.0
+CarpetRegrid2::radius_1[ 2]         =  16.0
+CarpetRegrid2::radius_1[ 3]         =   8.0
+CarpetRegrid2::radius_1[ 4]         =   4.0
+CarpetRegrid2::radius_1[ 5]         =   2.0
+CarpetRegrid2::radius_1[ 6]         =   1.0
+CarpetRegrid2::movement_threshold_1 =   0.16
+
+CarpetRegrid2::num_levels_2         =  7
+CarpetRegrid2::position_x_2         = -1.168642873
+CarpetRegrid2::radius_2[ 1]         =  64.0
+CarpetRegrid2::radius_2[ 2]         =  16.0
+CarpetRegrid2::radius_2[ 3]         =   8.0
+CarpetRegrid2::radius_2[ 4]         =   4.0
+CarpetRegrid2::radius_2[ 5]         =   2.0
+CarpetRegrid2::radius_2[ 6]         =   1.0
+CarpetRegrid2::movement_threshold_2 =   0.16
+
+CarpetRegrid2::num_levels_3         =  7
+CarpetRegrid2::active_3             = no
+CarpetRegrid2::radius_3[ 1]         =  64.0
+CarpetRegrid2::radius_3[ 2]         =  16.0
+CarpetRegrid2::radius_3[ 3]         =   8.0
+CarpetRegrid2::radius_3[ 4]         =   4.0
+CarpetRegrid2::radius_3[ 5]         =   2.0
+CarpetRegrid2::radius_3[ 6]         =   1.0
+CarpetRegrid2::movement_threshold_3 =   0.16
+
+
+
+ActiveThorns = "MoL Time"
+
+MoL::ODE_Method             = "RK4"
+MoL::MoL_Intermediate_Steps = 4
+MoL::MoL_Num_Scratch_Levels = 1
+
+Carpet::time_refinement_factors = "[1, 1, 2, 4, 8, 16, 32, 64, 128, 256]"
+
+Time::dtfac = 0.25
+
+
+
+ActiveThorns = "ADMBase ADMCoupling ADMMacros CoordGauge SpaceMask StaticConformal TmunuBase"
+
+ADMMacros::spatial_order = 4
+
+
+
+ActiveThorns = "TwoPunctures"
+
+ADMBase::metric_type = "physical"
+
+ADMBase::initial_data    = "twopunctures"
+ADMBase::initial_lapse   = "twopunctures-averaged"
+ADMBase::initial_shift   = "zero"
+ADMBase::initial_dtlapse = "zero"
+ADMBase::initial_dtshift = "zero"
+
+# needed for AHFinderDirect
+ADMBase::metric_timelevels = 3
+
+TwoPunctures::par_b          =  1.168642873
+TwoPunctures::par_m_plus     =  0.453
+TwoPunctures::par_m_minus    =  0.453
+TwoPunctures::par_P_plus [1] = +0.3331917498
+TwoPunctures::par_P_minus[1] = -0.3331917498
+
+#TODO# TwoPunctures::grid_setup_method = "evaluation"
+
+TwoPunctures::TP_epsilon = 1.0e-2
+TwoPunctures::TP_Tiny    = 1.0e-2
+
+TwoPunctures::verbose = yes
+
+
+
+ActiveThorns = "ML_BSSN ML_BSSN_Helper NewRad"
+
+ADMBase::evolution_method         = "ML_BSSN"
+ADMBase::lapse_evolution_method   = "ML_BSSN"
+ADMBase::shift_evolution_method   = "ML_BSSN"
+ADMBase::dtlapse_evolution_method = "ML_BSSN"
+ADMBase::dtshift_evolution_method = "ML_BSSN"
+
+ML_BSSN::harmonicN           = 1      # 1+log
+ML_BSSN::harmonicF           = 2.0    # 1+log
+ML_BSSN::ShiftGammaCoeff     = 0.75
+ML_BSSN::BetaDriver          = 1.0
+ML_BSSN::advectLapse         = 1
+ML_BSSN::advectShift         = 1
+
+ML_BSSN::MinimumLapse        = 1.0e-8
+
+ML_BSSN::initial_boundary_condition = "extrapolate-gammas"
+ML_BSSN::rhs_boundary_condition     = "NewRad"
+Boundary::radpower                     = 2
+
+ML_BSSN::ML_log_confac_bound = "none"
+ML_BSSN::ML_metric_bound     = "none"
+ML_BSSN::ML_Gamma_bound      = "none"
+ML_BSSN::ML_trace_curv_bound = "none"
+ML_BSSN::ML_curv_bound       = "none"
+ML_BSSN::ML_lapse_bound      = "none"
+ML_BSSN::ML_dtlapse_bound    = "none"
+ML_BSSN::ML_shift_bound      = "none"
+ML_BSSN::ML_dtshift_bound    = "none"
+
+
+
+ActiveThorns = "Dissipation"
+
+Dissipation::order = 5
+Dissipation::vars  = "
+        ML_BSSN::ML_log_confac
+        ML_BSSN::ML_metric
+        ML_BSSN::ML_trace_curv
+        ML_BSSN::ML_curv
+        ML_BSSN::ML_Gamma
+        ML_BSSN::ML_lapse
+        ML_BSSN::ML_shift
+        ML_BSSN::ML_dtlapse
+        ML_BSSN::ML_dtshift
+"
+
+
+
+ActiveThorns = "ML_ADMConstraints"
+
+
+
+ActiveThorns = "WeylScal4 Multipole"
+WeylScal4::offset                    = 1e-8
+WeylScal4::fd_order                  = "4th"
+WeylScal4::verbose                   = 0
+
+Multipole::nradii = 8
+Multipole::out_every = 128
+Multipole::radius[0] = 15
+Multipole::radius[1] = 30
+Multipole::radius[2] = 40
+Multipole::radius[3] = 50
+Multipole::radius[4] = 60
+Multipole::radius[5] = 70
+Multipole::radius[6] = 80
+Multipole::radius[7] = 90
+Multipole::variables = "WeylScal4::Psi4r{sw=-2 cmplx='WeylScal4::Psi4i' name='Psi4'}"
+Multipole::l_max = 4
+
+
+ActiveThorns = "AHFinderDirect"
+
+AHFinderDirect::find_every = 128
+
+AHFinderDirect::run_at_CCTK_POST_RECOVER_VARIABLES = no
+
+AHFinderDirect::move_origins            = yes
+AHFinderDirect::reshape_while_moving    = yes
+AHFinderDirect::predict_origin_movement = yes
+
+AHFinderDirect::geometry_interpolator_name = "Lagrange polynomial interpolation"
+AHFinderDirect::geometry_interpolator_pars = "order=4"
+AHFinderDirect::surface_interpolator_name  = "Lagrange polynomial interpolation"
+AHFinderDirect::surface_interpolator_pars  = "order=4"
+
+AHFinderDirect::output_h_every = 0
+
+AHFinderDirect::N_horizons = 6
+
+AHFinderDirect::origin_x                             [1] = +1.168642873
+AHFinderDirect::initial_guess__coord_sphere__x_center[1] = +1.168642873
+AHFinderDirect::initial_guess__coord_sphere__radius  [1] =  0.25
+AHFinderDirect::which_surface_to_store_info          [1] = 0
+AHFinderDirect::reset_horizon_after_not_finding      [1] = no
+AHFinderDirect::dont_find_after_individual_time      [1] = 30.0
+
+AHFinderDirect::origin_x                             [2] = -1.168642873
+AHFinderDirect::initial_guess__coord_sphere__x_center[2] = -1.168642873
+AHFinderDirect::initial_guess__coord_sphere__radius  [2] =  0.25
+AHFinderDirect::which_surface_to_store_info          [2] = 1
+AHFinderDirect::reset_horizon_after_not_finding      [2] = no
+AHFinderDirect::dont_find_after_individual_time      [2] = 30.0
+
+AHFinderDirect::initial_guess__coord_sphere__radius  [3] = 1.0
+AHFinderDirect::which_surface_to_store_info          [3] = 2
+AHFinderDirect::reset_horizon_after_not_finding      [3] = no
+AHFinderDirect::find_after_individual_time           [3] = 15.0
+
+AHFinderDirect::surface_definition                   [4] = "expansion product"
+AHFinderDirect::surface_selection                    [4] = "areal radius"
+AHFinderDirect::desired_value                        [4] = 50.0
+AHFinderDirect::initial_guess__coord_sphere__radius  [4] = 50.0
+AHFinderDirect::which_surface_to_store_info          [4] = 3
+AHFinderDirect::reset_horizon_after_not_finding      [4] = no
+
+AHFinderDirect::depends_on                           [5] = 1
+AHFinderDirect::desired_value_offset                 [5] = 0.001
+AHFinderDirect::which_surface_to_store_info          [5] = 4
+AHFinderDirect::reset_horizon_after_not_finding      [5] = no
+AHFinderDirect::dont_find_after_individual_time      [5] = 30.0
+
+AHFinderDirect::depends_on                           [6] = 3
+AHFinderDirect::desired_value_offset                 [6] = 0.001
+AHFinderDirect::which_surface_to_store_info          [6] = 5
+AHFinderDirect::reset_horizon_after_not_finding      [6] = no
+AHFinderDirect::find_after_individual_time           [6] = 15.0
+
+
+
+ActiveThorns = "QuasiLocalMeasures"
+
+QuasiLocalMeasures::verbose              = yes
+QuasiLocalMeasures::interpolator         = "Lagrange polynomial interpolation"
+QuasiLocalMeasures::interpolator_options = "order=4"
+QuasiLocalMeasures::spatial_order        = 4
+
+QuasiLocalMeasures::num_surfaces     = 6
+QuasiLocalMeasures::surface_index[0] = 0
+QuasiLocalMeasures::surface_index[1] = 1
+QuasiLocalMeasures::surface_index[2] = 2
+QuasiLocalMeasures::surface_index[3] = 3
+QuasiLocalMeasures::surface_index[4] = 4
+QuasiLocalMeasures::surface_index[5] = 5
+
+
+
+ActiveThorns = "CarpetIOBasic"
+
+IOBasic::outInfo_every      = 128
+IOBasic::outInfo_reductions = "norm2"
+IOBasic::outInfo_vars       = "
+        Carpet::physical_time_per_hour
+        ML_ADMConstraints::H
+        SphericalSurface::sf_radius
+        QuasiLocalMeasures::qlm_spin[0]
+"
+
+
+
+ActiveThorns = "CarpetIOScalar"
+
+IOScalar::one_file_per_group = yes
+
+IOScalar::outScalar_every = 128
+IOScalar::outScalar_vars  = "
+        CarpetReduce::weight
+        ADMBase::metric
+        ADMBase::curv
+        ADMBase::lapse
+        ADMBase::shift
+        ADMBase::dtlapse
+        ADMBase::dtshift
+        WEYLSCAL4::Psi4r
+        WEYLSCAL4::Psi4i
+        ML_ADMConstraints::ML_Ham
+        ML_ADMConstraints::ML_mom
+        SphericalSurface::sf_radius
+        QuasiLocalMeasures::qlm_newman_penrose
+        QuasiLocalMeasures::qlm_weyl_scalars
+        QuasiLocalMeasures::qlm_ricci_scalars
+        QuasiLocalMeasures::qlm_twometric
+        QuasiLocalMeasures::qlm_killing_vector
+        QuasiLocalMeasures::qlm_killed_twometric
+        QuasiLocalMeasures::qlm_invariant_coordinates
+        QuasiLocalMeasures::qlm_3determinant
+"
+
+
+
+ActiveThorns = "CarpetIOASCII"
+
+IOASCII::one_file_per_group = yes
+
+IOASCII::output_symmetry_points = no
+IOASCII::out3D_ghosts           = no
+
+IOASCII::out0D_every = 128
+IOASCII::out0D_vars  = "
+        Carpet::timing
+        CarpetReduce::weight
+        ADMBase::metric
+        ADMBase::curv
+        ADMBase::lapse
+        ADMBase::shift
+        ADMBase::dtlapse
+        ADMBase::dtshift
+        WEYLSCAL4::Psi4r
+        WEYLSCAL4::Psi4i
+        ML_ADMConstraints::ML_Ham
+        ML_ADMConstraints::ML_mom
+        SphericalSurface::sf_active
+        SphericalSurface::sf_valid
+        SphericalSurface::sf_info
+        SphericalSurface::sf_radius
+        SphericalSurface::sf_origin
+        SphericalSurface::sf_coordinate_descriptors
+        QuasiLocalMeasures::qlm_state
+        QuasiLocalMeasures::qlm_grid_int
+        QuasiLocalMeasures::qlm_grid_real
+        QuasiLocalMeasures::qlm_scalars
+        QuasiLocalMeasures::qlm_multipole_moments
+"
+
+IOASCII::out1D_every = 128
+IOASCII::out1D_vars  = "
+        CarpetReduce::weight
+        ADMBase::metric
+        ADMBase::curv
+        ADMBase::lapse
+        ADMBase::shift
+        ADMBase::dtlapse
+        ADMBase::dtshift
+        WEYLSCAL4::Psi4r
+        WEYLSCAL4::Psi4i
+        ML_ADMConstraints::ML_Ham
+        ML_ADMConstraints::ML_mom
+        SphericalSurface::sf_radius
+        QuasiLocalMeasures::qlm_shapes
+        QuasiLocalMeasures::qlm_coordinates
+        QuasiLocalMeasures::qlm_tetrad_l
+        QuasiLocalMeasures::qlm_tetrad_n
+        QuasiLocalMeasures::qlm_tetrad_m
+        QuasiLocalMeasures::qlm_newman_penrose
+        QuasiLocalMeasures::qlm_weyl_scalars
+        QuasiLocalMeasures::qlm_ricci_scalars
+        QuasiLocalMeasures::qlm_twometric
+        QuasiLocalMeasures::qlm_killing_vector
+        QuasiLocalMeasures::qlm_killed_twometric
+        QuasiLocalMeasures::qlm_invariant_coordinates
+        QuasiLocalMeasures::qlm_3determinant
+"
+
+IOASCII::out2D_every = 128
+IOASCII::out2D_vars  = "
+        SphericalSurface::sf_radius
+"
+
+
+
+Activethorns = "CarpetIOHDF5"
+
+IOHDF5::out_every              = 512
+IOHDF5::one_file_per_group     = yes
+IOHDF5::output_symmetry_points = no
+IOHDF5::out3D_ghosts           = no
+IOHDF5::compression_level      = 1
+IOHDF5::use_checksums          = yes
+IOHDF5::out_vars               = "
+        CarpetReduce::weight
+        ADMBase::metric
+        ADMBase::curv
+        ADMBase::lapse
+        ADMBase::shift
+        ADMBase::dtlapse
+        ADMBase::dtshift
+        WEYLSCAL4::Psi4r
+        WEYLSCAL4::Psi4i
+        ML_ADMConstraints::ML_Ham
+        ML_ADMConstraints::ML_mom
+"
+
+IOHDF5::checkpoint                  = yes
+IO::checkpoint_dir                  = $parfile
+IO::checkpoint_ID                   = yes
+IO::checkpoint_every_walltime_hours = 6.0
+IO::checkpoint_on_terminate         = yes
+
+IO::recover     = "autoprobe"
+IO::recover_dir = $parfile
+
+
+
+ActiveThorns = "Formaline"
+
+
+
+ActiveThorns = "TimerReport"
+
+TimerReport::out_every                  = 5120
+TimerReport::out_filename               = "TimerReport"
+TimerReport::output_all_timers_together = yes
+TimerReport::output_all_timers_readable = yes
+TimerReport::n_top_timers               = 20
+
+
+ActiveThorns = "IOZeroD"
+
+iozerod::cctk_iozerod_outdir = "./simulation-output/"
+iozerod::h5_output_var_name = "
+  AHFinderDirect::ah_radius{dataset='ar' out_it=10}
+  AHFinderDirect::ah_origin{dataset='ao' out_dt=0.1}
+"