From fed55cc36ec99276e734f769e9658cde7f552f8d Mon Sep 17 00:00:00 2001
From: "Reuben D. Budiardja" <reuben@budiardja.org>
Date: Tue, 26 Apr 2016 16:28:12 -0400
Subject: [PATCH] Example of correct retest script in hdf5benchmark test
application.
---
hdf5Benchmark/1.0/cle5.2_cray8.3.4/retest | 16 ++++++++++++++--
1 file changed, 14 insertions(+), 2 deletions(-)
diff --git a/hdf5Benchmark/1.0/cle5.2_cray8.3.4/retest b/hdf5Benchmark/1.0/cle5.2_cray8.3.4/retest
index 88badf2..916d40f 100755
--- a/hdf5Benchmark/1.0/cle5.2_cray8.3.4/retest
+++ b/hdf5Benchmark/1.0/cle5.2_cray8.3.4/retest
@@ -45,6 +45,17 @@ rm -f status
cd $SW_WORKDIR
+#-- Four things are required in the PBS script such that it can be followed
+# correctly by jenkins:
+# 1. The PBS_JOBID (given upon submission with 'qsub') needs to be written
+# to the ${SW_BLDDIR}/.running file on submission
+# 2. The main output of the test (i.e. typically "aprun" command output)
+# needs to be appended to ${SW_BLDDIR}/.running as the test runs
+# 3. If the test succeed, the first line of $SW_BLDDIR/status file must be
+# the string "verified"
+# 4. ${SW_BLDDIR}/.running must be removed after the test completes
+
+
cat > ${PACKAGE}.pbs << EOF
#!/bin/bash
#PBS -N ${PACKAGE}
@@ -58,7 +69,8 @@ module swap PrgEnv-cray PrgEnv-gnu
module add craype-hugepages2M
H5BIN=${SW_BLDDIR}/bin/hdf5Benchmark
-aprun -n 12 \$H5BIN | tee ${PACKAGE}.log
+aprun -n 12 \$H5BIN | tee ${PACKAGE}.log | tee -a ${SW_BLDDIR}/.running
+#aprun -n 12 \$H5BIN | tee -a ${SW_BLDDIR}/.running
#-- Check result
if [ -e RadHyd3D_output_000000010.h5 ]; then
@@ -80,7 +92,7 @@ EOF
#submit job and touch .running file - marker to infrastructure that
-qsub ${PACKAGE}.pbs &> ${SW_BLDDIR}/.running
+qsub ${PACKAGE}.pbs 2>&1 > ${SW_BLDDIR}/.running
# qsub returns 0 on successful job launch, so if failure return 1
if [ $? -ne 0 ]; then
--
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